Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015923395.1_cds_XP_016472005.1_64281
CDS Infomation

[gene=LOC107794066] [db_xref=GeneID:107794066] [protein=D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like] [protein_id=XP_016472005.1] [location=join(72547..73087,74306..74682,74915..75025,75106..75201,75476..76147)] [gbkey=CDS]
Sequence

ATGGCGGCTTCCGCTTCTTCAACTATCCTTTTCTCTTCAAAATCATCACGCGCCTCTCTC
TCATGGAAAAACCAACTCGCTTCCACCTCCGCCTTAGGCATCTCCGGCGTTTCCCTCCGC
CGCAGCAGCAGCCACCGTCAGTTCGTCGTTTTCTCCATGGACGCCAAACCTACGGTTCTC
GTCGCCGAGAAACTCGGGGAGGCAGGGCTGAACCTTCTAAAGGAATTCGCGAACGTGGAT
TGCTCATATAATTTGAGCCCCGAGGAGCTGTGCACTAAGATCTCGCTTTGTGATGCGTTG
ATTGTCCGGAGTGGAACGAAGGTGAGCCGTGAGATCTTTGAATCTTCCGGTGGACGGCTC
AAAGTTGTTGGGCGTGCTGGTGTCGGGATTGATAACGTTGATCTAGCGGCGGCGACGGAG
CATGGATGCCTAGTGGTTAATGCGCCCACTGCTAATACAGTTGCTGCTGCCGAGCATGGC
ATCGCTCTTCTCACCGCTATGGCTCGGAATATTGCTCAAGCTGATGCTTCCGTCAAAGCC
GGGAAATGGCTGAGGAACAAATATGTTGGTGTCTCCCTGGTAGGCAAAACACTTGCTGTG
ATGGGTTTTGGGAAGGTTGGATCAGAAGTTGCAAGGCGAGCTAAGGGGCTTGGCATGCAT
GTTATTGCTCATGACCCATATGCCCCTGCTGACCGTGCACGTGCTATTGGGGTGGAACTT
GTGAGCTTTGATGAAGCCCTCGCATCTGCTGATTTCATCTCACTTCACATGCCCCTCACC
CCTGCTACAAAGAAGATCCTGAATGATGAAACTTTTGCAAAGATGAAAAAGGGTGTACGG
ATTGTGAATGTTGCTCGTGGGGGTGTGATTGATGAAGAAGCTTTGGTGAGGGCACTTGAT
GCAGGCATTGTGGCACAGGCAGCACTTGATGTTTTCACTGTGGAGCCGCCACCAAAAGAT
AGCAAGTTGATTCAACATGATAATGTGACTGCAACTCCACATCTTGGTGCTAGTACTATG
GAAGCTCAGGAAGGCGTGGCAATTGAGGTAGCGGAAGCAGTTGTTGGCGCTTTGAAAGGG
GAGCTCTCTGCTACAGCTGTCAATGCACCTATGGTTCCTGCTGAGGTTCTATCAGAGCTG
AAGCCTTATGTCGTGCTTGCCGAAAAACTTGGTAGACTTGCTGTCCAGCTAGTTGCAGGT
GGAAGTGGTGTGAAATCAGTGAAAGTAACATATGGTTCAGCTAGAGCACCTGATGATCTC
GACACAAGACTGCTTCGTGCCATGATAACTAAAGGCTTGATTGAGCCTATTTCCAGTGTT
TTCATTAACCTGGTAAATGCAGATTTCACTGCTAAACAAAGGGGACTACGGATAGCTGAA
GAACGAATTCTTCTAGATGGTTCACCAGAAAGTCCAGTTGAGTTCATTCAGGTTCAGATT
GCCAATGTGGAATCCAAGTTTGCCAGTGCTATATCTGATTCAGGAGAGATTAGAGTGGAG
GGTAGAGTTAAGGATGGAGTCCCTCATTTGACAAAGGTTGGATCTTTTGAAGTGGATGTG
AGCTTGGAAGGCAGTATCATTCTTTGCAGCCAGGTTGATCAGCCAGGAATGATTGGAAAA
GTTGGTAGCGTCTTGGGAGAGGAGAACGTGAATGTCAGCTTCATGAGTGTTGGAAGAATT
GCTCCAAGAAAACAAGCTGTTATGGCTATTGGGGTGGATGAACAACCCAGCAAGGAGTCA
CTCAAGAGGATTGGGGAGATTCCTGCCATCCAGGAATTTGTTTACCTTAAATTATAG

Peptide Sequence

PEP ID

XP_016472005.1
PEP Infomation

PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Nicotiana tabacum]
Sequence

MAASASSTILFSSKSSRASLSWKNQLASTSALGISGVSLRRSSSHRQFVVFSMDAKPTVL
VAEKLGEAGLNLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREIFESSGGRL
KVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADASVKA
GKWLRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVEL
VSFDEALASADFISLHMPLTPATKKILNDETFAKMKKGVRIVNVARGGVIDEEALVRALD
AGIVAQAALDVFTVEPPPKDSKLIQHDNVTATPHLGASTMEAQEGVAIEVAEAVVGALKG
ELSATAVNAPMVPAEVLSELKPYVVLAEKLGRLAVQLVAGGSGVKSVKVTYGSARAPDDL
DTRLLRAMITKGLIEPISSVFINLVNADFTAKQRGLRIAEERILLDGSPESPVEFIQVQI
ANVESKFASAISDSGEIRVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCSQVDQPGMIGK
VGSVLGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKESLKRIGEIPAIQEFVYLKL

Transcript Sequence

Gene sequence data has not been registered.